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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… of microorganisms live among viruses that infect them. But what trends govern those virus-host interactions? Do … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Institute, a DOE Office of Science User Facility, is supported under Contract No. DE-AC02-05CH11231. JRS is …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … down potential sources of methanogenesis, with metagenomic support from the JGI. First they were able to identify the …
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Trent Northen
Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was over 95% successful at classifying the fungal genomes Support Vector Machine (SVM)-based prediction of lifestyle …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… mix-and-match characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … that we studied are involved in transfer of the amine group, or the N group, to a variety of different molecules. So …
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JGI-KBase Panel at SACNAS
… 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific contribution? This session will demonstrate to students (and their mentors) how to … contribution they make, whether as part of a course or internship, and before ever publishing a research article. …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… in both genome content and structure following a genome duplication event that occured some 60 million years ago. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … … Ceratopteris richardii on Phytozome Data portal … Datasets …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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Cataloging the Microbes that Manage the Health of River Systems
… systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … The team also provided several access points for these datasets. As part of a larger microbiome data integration hub, … could work across platforms. … This work was partially supported by awards from US Department of Energy (DOE) Office …
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Decoding Yellowstone’s Microbial Mats
Life as we know it wouldn’t exist without cyanobacteria; they began oxygenating Earth over two …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group … develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software …
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Daniel Udwary
Dr. Udwary serves as a computational biologist for JGI’s Secondary Metabolites group. His research interests lie in use and development of …
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