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The Case for Conservation
… to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how … fruit and seed yield. Conversely, some crops such as bioenergy sorghum may need sterile males; plant breeding … of Evolution Rosemary Grant Award to S.B.C.; NSF DEB-1239992 to N.J.W.; the Emil Aaltonen Foundation and the …
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New Research Sheds Light on Diversity in the Deep Sea
… near hydrothermal deep-sea vents hold vast potential for bioenergy.   The Science Hydrothermal vents are ocean-floor … the communities studied. The datasets are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) … OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 and DBI-2047598 to K.A. We thank the Department of …
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A One-Stop Shop for Analyzing Algal Genomes
… for these traits takes us closer to harnessing algae for bioenergy and the greater bioeconomy. By bringing together … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Acids Research journal. The genome portal reinforces the JGI’s new strategic focus on exploring algal biology, …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… biofuel feedstocks of interest to the U.S. Department of Energy (DOE). (Poplar is a Flagship Plant.) To engineer … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … National Key Research and Development Program of China (2017YFC0505203, 2016YFD0600101), and the National Key …
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Evolution of a Fungal Gene Expression Regulator
… to protect poplar and other crops being considered for bioenergy feedstock development. Summary With the aim of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like … Robert Schmitz at the University of Georgia and including JGI researchers conducted the largest analysis to date of …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and what new skill sets they look … school.  The interns from this cohort and their respective JGI mentors are: Ruoxi Zhao and mentor Margot Bezrutczyk …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… live in our immediate microbiome. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …
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Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
Phytozome workshop held during the June 2022 CROPS Conference at the HudsonAlpha Institute for … the Plant Comparative Genomics portal of the Department of Energy Joint Genome Institute, and facilitates accurate and …
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Fungal Friends or Foes in Plant Roots
… can in turn boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like an office … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: Deep-sequencing of ecologically relevant …
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Supercharging SIP in the Fungal Hyphosphere
… communities, with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope … in industry and biotechnology for the production of  clean energy . Summary Arbuscular mycorrhizal fungi, the most … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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