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Gut Fungi: Unexpected Source of Novel Chemicals
The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest … can whip up dozens of complex natural products, including new ones. The Impact In the past, natural products have been … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … her team work with other JGI scientists in development of new, advanced mass spectrometry research products such as …
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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant Pandey of CRD). The …
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Kanwar Singh
Kanwar spends part of his time assisting JGI users by processing their single … using our high throughput pipeline. He also explores new methods for creating sequencing libraries and optimizing …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is published in a … Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, … and it feels so rewarding,” Wint said. For Axel Visel, JGI Science Deputy and a co-founder of the internship …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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Ancient Algae Reveal Secrets of Plant Evolution
… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The algal genomes sequences are available on the JGI’s  PhycoCosm portal. … This work was funded by the US …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … to protect themselves from environmental stresses, ferns’ secondary metabolites and associated genes are great … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Sequencing and Analysis of the Entire Genome of the Mycoparasitic Bioeffector Fungus Trichoderma asperelloides Strain T 203 (Hypocreales)
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The Case for Conservation
… genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the … to the terrestrial ecosystems exposed fungi to numerous new ecological niches and triggered rapid diversification of …
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Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032
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