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Characterization of the Clostridium thermocellum AdhE, NfnAB, ferredoxin and Pfor proteins for their ability to support high titer ethanol production in Thermoanaerobacterium saccharolyticum
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Back in the Lab: the 2023 Summer Intern Experience
This summer marked the first fully in-person internship experience … in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 …
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Boosting Small Molecule Production in Super “Soup”
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … first author of the study, the lysate produced BDO at higher productivity rates than were noted inside the cell. … in cells often have synthesis rates on the order of one to five grams per Liter per hour,” Jewett said. “From the …
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A One-Stop Shop for Analyzing Algal Genomes
… roles in global carbon cycling, are sources of natural products, and have potential as biofuel feedstocks. … sequence and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Cataloging the Microbes that Manage the Health of River Systems
… turn affecting environmental and human health, energy production and agriculture. Understanding the compositions of … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … Science Program and the University of Colorado Anschutz’s Genomics Shared Resource. The work (proposal …
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Single mutation at a highly conserved region of chloramphenicol acetyltransferase enables isobutyl acetate production directly from cellulose by Clostridium thermocellum at elevated temperatures
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Better Living Through Bioenergy
Biofuels and bioproducts are a way to kick our addiction to fossil fuels. In this episode, we peek into how scientists Aindrila Mukhopadhyay and Steve Singer are harnessing the versatile … research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy …
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Expanding Virophage Diversity
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the number of known high quality virophage genome sequences 10-fold through … an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The work also used …
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Kanwar Singh
Kanwar spends part of his time assisting JGI users by processing their single cell samples using our high throughput pipeline. He also explores new methods for …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, … send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks …
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The Case for Conservation
… purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and … part of the flora, fire moss has adapted to conditions such as UV irradiation, heavy metal contamination, and … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how …
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