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2024 Progress Report
… Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are … in our new Strategic Plan , which was released in April 2024 — through serving an increased number of users with a … A record number of primary users — 2,456 — had active proposals with us, along with more than …
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Microbial Diversity for Biotechnology
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… and molecular characterization capabilities in just one research proposal. Guest speaker Michelle O’Malley of UC … Learn more  here about the “Facilities Integrating Collaborations for User Science” (FICUS) program. Letters of … will be competitive. Q:  Can you elaborate on the single-cell genomics capabilities? A:  EMSL’s capabilities include …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… by our research team surveying the genomic and phenotypic diversity across the natural range of switchgrass found that … the adaptive potential of switchgrass and is a key component in providing genetic variation available for selection … subsequently represent a valuable breeding resource for expanding the range of suitable growing conditions and …
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UC Merced Interns Reflect on Their JGI Summer Projects
… Tools like Slack, Google Docs, and GitHub enabled virtual collaboration. JGI also hosted events to enable students to … The JGI-UC Merced internship program was founded in 2014 with the goal of inspiring students to embark on a career … Check out the short videos highlighting the exciting work done by the 2020 cohort of JGI-UC Merced interns .   by: …
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JGI@25: The Little Alga That Could
… and environmental challenges. Chlamydomonas is a single-celled alga with a unique place in evolutionary history. … JGI shows that those sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific … of all kinds,” noted Igor Grigoriev, head of the JGI’s Fungal & Algal Program, including work with Olivier Vallon …
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Ancient Algae Reveal Secrets of Plant Evolution
… have enhanced our understanding of how early plants transitioned from water to land. Key gene groups involved in stress tolerance and multicellularity enabled plants to develop complex structures and … strains of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research …
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Enlarging Windows into Understanding Gene Functions
… Lawrence Berkeley National Laboratory (Berkeley Lab). And one of the tools that researchers can apply to study the … the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We … could be useful for industrial biofuel production, and multicellular development. “DAP-Seq is the main source of …
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Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
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Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems
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