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Calculating the Costs of Multiple Switchgrass Gene Copies
… to expand its habitat range. But at what cost?  A collaborative team led by researchers at the University of … idea that 8X switchgrass was an unremarkable, homogenous group and raised several important questions. Where did the … respond to pronounced climate shifts. (C4 plants use a more efficient form of photosynthesis that reduces water loss, …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — Summit and Frontier — …
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Building Sphagnum Genomic Resources
… a number of resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for … Environments) project, assessing how northern peatland ecosystems respond to increases in temperature and elevated … researchers led by David Weston of Oak Ridge National Laboratory make the case for  sphagnum as “an unparalleled …
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Identifying the Microbial Cleanup Crew at a Superfund Site
Science User Facility located at Lawrence Berkeley National Laboratory and used to identify the microbes involved in … resulting metagenomic data. (Data from the project are available on the  JGI Genome Portal .) The team has also been … JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the team has since identified  …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
DNA Synthesis) call, and he noted the data had driven his lab’s focus on guide RNA library generation and development … “I moved to UC Davis in 2014,” recalled Philipp Zerbe of the University of California, Davis. “The work with … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), shows methanogenesis is not … global carbon cycle and greenhouse gas dynamics, and the engineering of new, optimized methane-making microbes. In … research of these newly found methanogens  in diverse ecosystems with  support from a DOE Established Program to …
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Pinning Down a Piece of Photosynthesis
Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Structurally, this protein is … provide a list of machine parts, and an idea of their groupings.  One pivotal effort along these lines came from … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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David Goodstein
Project, he began developing larger comparative genomic systems as the JGI’s eukaryote research efforts expanded to … Goodstein currently leads the Plant Comparative Analysis group, and is responsible for genome annotation, comparative … analysis and data distribution for the JGI's direct collaborators and the wider plant science community. Dr. …
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Extracting the Secrets of Secondary Metabolites
… been limited due to the lack of robust tools available for carrying CRISPR into microorganisms. CRAGE (Chassis-independent Recombinase-Assisted Genome Engineering) is a technique researchers can use to integrate … because the BGCs that produce them cannot be activated in lab environments. CRAGE made some headway in overcoming this …
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JGI & KBase at PAG XXVII
… from the DOE Joint Genome Institute (JGI) and the  DOE Systems Biology Knowledgebase (KBase) will be at Booth 509. … chat with representatives from KBase and the JGI about collaborative science opportunities. Learn how to apply for a … Community Science Program, and how you can use the KBase system to accelerate your plant genomics research. Click …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
The Berkeley Lab Biosciences Area Entrepreneurship Program presents… Eyes … Startups in Synthetic Biology Who’s Invited? All Berkeley Lab Employees and Affiliates. When: August 29th, 3:00 pm – … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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JGI@25: The Little Alga That Could
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … at UC Berkeley and also a faculty scientist in the Berkeley Lab Biosciences Area. Merchant’s fascination with Chlamy … the impact of this tiny, single-celled organism as a model system. “People name genes based on similarity to the Chlamy …
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