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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s … Clarissa Nobile, investigating interactions between microbes and venomous hosts. She also facilitates the …
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2024 Progress Report
… Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab … of primary users — 2,456 — had active proposals with us, along with more than 15,000 secondary users who made use of …
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … of metagenome-assembled viral genomes . The Impact The microbes that play key roles in cycling nutrients such as … Biotechnology , a team from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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SIPs with Standards
… technique for studying microbial communities. These experiments can show which microbes are handling specific nutrients, or what they're … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible …
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Analyze Data
… The JGI supports the entire data life cycle — from experimental design to reuse. Armed with the high-quality data … efforts to integrate data in support of new research questions that span domains. We also work with our partners to …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   … amenable to statistical analysis. To meet these needs, the JGI deploys state-of-the-art sequencers and platforms …
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University of California, Merced Internship Program
… Originally conceived as a UC Merced graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to …
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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens
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DAP-seq Drives Robust Mapping of Gene Regulation
… assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated … plant lineages. Aligning with U.S. Department of Energy (DOE) interests, this advancement holds the potential to … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through … Inspired by the Human Genome Project (HGP), and building upon the principles for open access in the field of genomics … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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