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How Filamentous Fungi Sense Food
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently … (DOE) Joint Genome Institute, a DOE Office of Science User Facility, was supported by the Office of Science of the …
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University of California, Merced Internship Program
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A Collaboration to Improve Plant Genome Annotations Across Species
… of Energy (DOE) Joint Genome Institute (JGI)*, a national user facility located at Lawrence Berkeley National … to link experimental evidence across species. Centralized databases with large-scale transcriptome projects such as … is an updateable resource. To demonstrate that, we included datasets from two species, one of which is sweet sorghum Rio …
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Rex Malmstrom
… a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His … also carries out custom preparative work for difficult user projects, including those that require fluorescence …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Nikos Kyrpides
… focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for … analysis, as well as mining and visualization of big data. … BA in Biology, Aristotle University of Thessaloniki, …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst … find 13 additional predicted viral  genomes . The team dubbed these viruses Altivir, finding them in three of the …
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Using BLAST to Teach “E-value-tionary” Concepts
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JGI Welcomes New UEC Members
The JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their access to technical capabilities JGI offers, …
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Anna Ratner
… is working on the display and visualization of large omics data. …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… it, viruses are most likely in your system and in your data, and they’re probably influencing the microbes there,” … In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around the world, finding over 125,000 partial … its existing Integrated Microbial Genomes & Microbiomes database to include a dedicated section for viruses, so …
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JGI Scientists Pen Genome Watch Articles
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … our role as a Department of Energy Office of Science User Facility. As such, JGI is involved in a broad variety … metabolism . And postdoctoral researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program …
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