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JGI Scientists Pen Genome Watch Articles
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … our role as a Department of Energy Office of Science User Facility. As such, JGI is involved in a broad variety … metabolism . And postdoctoral researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program …
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Using BLAST to Teach “E-value-tionary” Concepts
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… it, viruses are most likely in your system and in your data, and they’re probably influencing the microbes there,” … In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around the world, finding over 125,000 partial … its existing Integrated Microbial Genomes & Microbiomes database to include a dedicated section for viruses, so …
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Jinghua Jenny Huang
… of large amount isolate genomic and metagenomic data stored in Oracle databases, Berkeley DB and files in various formats. …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or online catalog, I guess. So we've also been … that makes it really challenging to actually interpret the data. And so we've been able to get these-- DAN: In terms of …
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Marcel Huntemann
… metagenomes. He also works on automating intra-department data exchange and assists with large scale computations on …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis group. He received his Ph.D. from the … in bacteria. Since 2016, he has been the lead of the User Support Analysis group. The group performs custom … transcriptome, epigenome and other functional genomics datasets generated by JGI user science projects. … BS in …
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Annotation of metagenome short reads using proxygenes
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Transcriptional control of Clostridium autoethanogenum using CRISPRi
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Viruses Reprogram Cells into Different Virocells
… in part by the  Facilities Integrating Collaborations for User Science (FICUS) collaborative science initiative … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Science Laboratory (EMSL), a DOE Office of Science User Facility located at Pacific Northwest National …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … be specific to species or groups of species.  The genome data also revealed that green millet was introduced into the … and Adam Healey, two of the co-first authors, led the data analyses and assembled the green millet “pan-genome” (a …
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