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… project - they also worked with Sharon Greenblum from the User Support Analysis team to analyze plant microbiome data via programming languages like Python. The more … plants and extracting DNA. They also analyzed 16s amplicon data to determine microbiome composition. This gave them an …

… UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, … biology, single cell and systems biology, omics, and big data science, machine learning for experimental science, … environment.  During the tours through four national user facilities located at Berkeley Lab, including the JGI, …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of a virus relative to its host (inferred through sequence data) can suggest different predatory behaviors. A high … Winner” — “Piggyback the Winner.” In the microbial mat, the data suggest viruses are indeed piggybacking their hosts. …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds light on the … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Ceratopteris richardii on Phytozome data portal … Datasets …

… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, and … Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes … . The study’s pivotal NMR (nuclear magnetic resonance) data, gathered using magnetic fields to diagnose electronic …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and analyze the single nuclei and spatial transcriptomics data this work leverages.   These experiments focused on two … hair. At such resolution, this spatial transcriptomics data captured molecular information from both plant cells …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the world, including data from several DOE-mission relevant proposals through …

… in their neighborhoods and nearby forests with the right tools to track infection. The parallel development of the … large-scale “citizen science” project to generate real-time data for modeling and predicting the spread of a plant … 500 people participated in SOD Blitz activity, and these data were subsequently used by three million others in the …

… I started this, uh, summer internship was working with big data, but something that I learned from this program was how … And I’m excited to take that with me, along with other tools that I can use to, um, perform computational biology.  …

… and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s GitHub …