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The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi
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Taking Stock of the Known and Unknown Microbial Space
… still unknown.  “We took a deep dive into over 1.8 million bacterial and archaeal genomes to see how much of their … Natalia Ivanova conducted a census of publicly available bacterial and archaeal sequences. Kyrpides heads the JGI’s … MAGs significantly expanded the estimated diversity of Bacteria and Archaea With phylogenetic diversity standing in …
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JGI@25: From Life at the Extremes to Editing Genomes
… has resulted in several papers, including one in 2018 on the discovery of miniature CRISPR-associated … Cell. 2019 Feb 21;73(4):727-737.e3. doi: 10.1016/j.molcel.2018.12.015. Harrington LB et al. Programmed DNA destruction by miniature CRISPR-Cas14 enzymes. Science. 2018 Nov 16;362(6416):839-842. doi: 10.1126/science.aav4294. …
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Fungus Fuels Tree Growth
… The team found that, unlike pathogenic or mycorrhizal fungi (mutualist symbionts that induce structural changes in … 01 to F. Martin), JGI Community sequencing program project (CSP570, DE-AC02-05CH11231), and National Science Foundation …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… duplications, and even more ancient gene transfers from bacteria have all armed the plant with an array of defense … (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has … the fern’s defense-related gene families were snatched from bacteria. The insertion of transposable elements — also …
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Simon Roux
… prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology 21, e3002083 Roux et al., 2021. … microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome … viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions. The …
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Evolution of a Fungal Gene Expression Regulator
… analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome … they regulate their genomes, but is not well understood in fungi. A team of researchers reported on the largest … tree of life to date, involving more than 500 species of fungi. The Impact Interactions between plants and fungi run …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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SPRUCE-ing Up Science
… Duke University, published their research related to how bacteria that colonize the roots of sphagnum work to … computer science, to reveal clues about how microbial and bacteria communities influence the carbon-sequestering … his PhD dissertation defense presentations and beyond. In 2018, a friend of his wife’s passed along an open postdoc …
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Axel Visel
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce their own food and …
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JGI on the 2021 Highly Cited Researchers List
… in harnessing the crop toward producing sustainable alternative fuels Igor Grigoriev, Simon Roux, Susannah Tringe, … Santa Barbara, he and his colleagues found that anaerobic fungi from herbivore poop might be a new source of novel … a JGI Engagement Webinar on How to Successfully Apply for a CSP Proposal. She also co-organized the NeLLi 2021 …
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