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Picking Up Threads of Cotton Genomics
… fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the green pods in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for all this new cotton work, and even the original cotton project was to try to bring in molecular methods of breeding …
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JGI-UC Merced Interns Share Their 2021 Experiences
… interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate … Implementing a Scalable JGI-RQC Pipeline on the Cloud …
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Exploring Polymorphisms Created by Transposable Elements
… My project at the Joint Genome Institute (JGI) was to measure …
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Tour the IGB
… zoom in and out. 1st floor 2nd floor 3rd and 4th Floors The JGI mural on the 3rd floor whimsically references dozens of iconic JGI contributions to advancing the frontiers of …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring users … amenable to statistical analysis. To meet these needs, the JGI deploys state-of-the-art sequencers and platforms …
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A Plant Root Atlas for Tracking Developmental Trajectories
… 100,000 single root cells and combining the information with previously published datasets. The work was  recently … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Phytozome and will be available for future single-cell projects.” The Berkeley Lab  Biosciences Area has been …
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Natural Prodcast
… to medicine, the environment, and human health. As the JGI acts on its goals in — and builds out its capabilities … field about current and future developments, and how the JGI can be part of that space.   …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… what makes polar photosynthesizers tick. He’s working with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Program makes genomes and multi-omics data from JGI CSP projects publicly available at the PhycoCosm portal . …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the mechanisms through which sorghum is equipped to deal with adverse environmental conditions, researchers hope to … in Sorghum (EPICON) is a five-year, multi-institution project funded by the DOE Office of Biological and …
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Building Wet and Dry Lab Skills
… by a DOE training grant.  Building off the previous year’s project, undergraduate interns Tamyra Long and Zyiah Mikes worked with mentors Yi Zhai and John Vogel from the Plant … on to Dori – a computer cluster owned and operated by the JGI and Berkeley Lab – to launch a jupyter notebook running …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been applied … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Six join FICUS program in 2026
… The JGI is excited to welcome six to the Facilities Integrating … (FICUS) program for fiscal year 2026, in partnership with the Environmental Molecular Sciences Laboratory (EMSL) … and other national user facilities. Focus areas for these projects include biofuels, biomaterials and bioproducts; …
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