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The JGI Data Portal: Improving User Experience
… “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to … areas of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of data, accessible through the Genome Portal. …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … This means it contains more than two copies of the genome , which can have pronounced ecological and … These are primarily tetraploids (4X or four copies of the genome) and octoploids (8X or eight copies of the genome). …
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Busting the Unbreakable Lignin
… cellulose and hemicellulose is well-established: Across all life forms and with little exception, organisms have figured … to slowly break down lignin (think of a fallen, decomposing tree in the forest). Because oxygen is essential to how … with researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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The metagenome of the marine anammox bacterium ‘Candidatus Scalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium
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Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California
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Building Sphagnum Genomic Resources
… researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. For the sphagnome project, germplasm establishment and … (DFG, PE 2147/1-1), the European Union (FP7-People-2013-CIG, Grant No PCIG14-GA-2013-630188 and Marie …
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Old can be new again: HAPPY whole genome sequencing, mapping and assembly
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Graduate Students Get Thesis Research Opportunity at the JGI
… 20 UC Merced students have contributed to the research of 13 JGI scientists through the JGI-UC Merced Genomics … pressures on carbon cycling dynamics at the terrestrial-marine interface, which at a larger scale may be applicable … at Berkeley Lab. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI Scientists Pen Genome Watch Articles
Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in environmental genomics by writing for the column Genome Watch in  Nature Reviews Microbiology .  The latest … Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program lead Igor Grigoriev took readers on a quick …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern … for bioremediation, new agricultural applications or life-saving drugs. A better understanding of its genetic … all major evolutionary lineages in the land plant tree of life. Ultimately, the resulting comparative …
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Tanja Woyke
Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research … of bacterial and archaeal isolates expand coverage of the tree of life. Nature Biotechnology 35, 676-683. Schulz et al. 2017. …
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Matt Blow
… on computational and experimental approaches to study genome regulation in human and other vertebrate genomes. … of Prokaryotes. PLoS Genet 122:e1005854. Nord Et Al. 2013. Rapid and Pervasive Turnover of Mammalian Enhancer … of weakly conserved heart enhancers. Nat Genet 429:806-10. … Wellcome Trust Prize studentship Editorial board …
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