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SPRUCE-ing Up Science
… brings a bioinformatics expertise, a combination of biology and computer science, to reveal clues about how … “This makes it one of the most efficient carbon-sucking ecosystems on the planet,” Lawrence said. For Lawrence, this …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… an assistant professor at the University of Delaware — is  building on this work to explore an enzymatic ‘toolbox’ of … transporters, pathways — into microbes that we do know, to advance our biotech goals.” …
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JGI User Executive Committee Expands
… how these changes affect the dynamics and functioning of ecosystems. She leads a recently approved CSP New … decomposition. She’s also participated in the 1000 Fungal Genomes Project and has an interest in cross-disciplinary …
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Cultivating Symbiotic Antarctic Microbes
The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in environmental … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … about how microbes have adapted to thrive in polar ecosystems. The work by Cavicchioli’s team sheds light on the …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… booth to learn about our user programs and how we can help advance your science. …
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Effects of Polar Light Cycle on Microbial Food Web
… nutrient cycling that evolved separately from other similar systems, and offers new clues into a unique environment in … many researchers for nearly five decades. In these frigid systems, where organisms higher up in the food web like fish … lake, they found. Near the lower portion of the top layer, known as the interface, there is a strong chemical and …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by … organic matter (saprobes), and many plant pathogens known to infect most major food crops and feedstocks for …
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Ancient Algae Reveal Secrets of Plant Evolution
… genetic foundations that helped plants conquer land over 600 million years ago. The Science By studying the genes of … Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which were isolated … a better understanding of plant evolution and could lead to advancements in improving plant resilience and productivity. …
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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Training the Next Generation of Talent
… as a first-year graduate student in the Quantitative Systems Biology (QSB) Group under the School of Natural Sciences … of a genome that contains transcribed instructions for building and maintaining cells through the use of …
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The Power of One, Amplified
… that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with … the vast majority in, on, and around the planet remain unknown. In recent years, advances in sequencing technologies and bioinformatic tools …
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A Complex Confection Decoded: Sugarcane Reference Genome
… crop breeders can use to improve sugarcane varieties and advance a sustainable bioeconomy. Researchers and farmers … .   … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and https://doi.org/10.46936/10.25585/60001194) conducted by the USA Department of Energy (DOE) …
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