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… to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … and Biochemistry , the team found that fungi are playing a bigger role in soil decomposition processes than expected. …

… is a, a really valuable experience.  Nathaniel Brown : My biggest concern before I started my internship was whether I … the, um, final symposium at UC Merced  Daravuth Cheam: The biggest concern I had when I started this, uh, summer internship was working with big data, but something that I learned from this program was …

… Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial Interactions Group who has mentored several … intern): Accepted a post-doctoral position with the Plant and Microbe Interaction group at Oak Ridge National …

… for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic … a regulator of lipid metabolism in microalgae .  Nature Plants 1: 15107 Lupiáñez DG, Kraft K, Heinrich V, Krawitz P, … Metagenomic discovery of biomass-degrading genes and genomes from cow rumen . Science 331, 463-7. Visel A , Zhu …

… biology, single cell and systems biology, omics, and big data science, machine learning for experimental science, …

… workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for … robust methodologies for analyzing and understanding viral genomes and their interactions with microbial hosts. The …

… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … Blow, and their team have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied … Ralstonia with enzymes that make phosphate bioavailable for plants. When these engineered bacteria were used with the …

… TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata matters. …

… by the JGI in 2009 and it is considered to be a Flagship Plant. By uncovering and characterizing the mechanisms … that makes up an individual’s genome. The genes of sorghum plants are likely responsible for the crop’s ability to … rhizosphere (soil surrounding the root) samples from the plants at the same time each week over the full life cycle …

… organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for ‘wanderer’). But they vary across … the global ocean. Instead, they sharply delineated into two big geographical groups: those in colder, polar waters, and …

… 5mC is an important piece of how they regulate their genomes, but is not well understood in fungi. A team of … than 500 species of fungi. The Impact Interactions between plants and fungi run the gamut from mutually beneficial to … that can move to another location in the genome. Many plant pathogens such as the fungi that cause poplar leaf …