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The Case for Conservation
… crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, … Carey, now at the HudsonAlpha Institute for Biotechnology, reported that high quality genome references are now … HudsonAlpha. As the team discussed in a JGI podcast episode about the work, the effort to fully sequence the fire moss …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for … Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three … and evolutionary biology. Dr. Rokhsar’s research is focused on understanding the origin, evolution, and diversity …
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Synthetic Biology Open Language (SBOL) Version 2.2.0
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Pinning Down a Piece of Photosynthesis
… function of a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle … an array of experiments at universities and national user facilities, researchers found that this protein detects … we were able to work with on this project to ask questions about structure and function,” Blaby-Haas said.  Looking at …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter scenes that came with crayons in various shades of … and Koonin both noted that other research in parallel has reported similar “dramatic expansions” of the global RNA …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started … the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has brought …
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Jasmyn Pangilinan
… provides bioinformatics tools and analysis support for user science, with a focus on metagenomes. Passionate about automation and collaboration, she works to develop and …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… and what escapes to the atmosphere in the form of greenhouse gases (e.g., carbon dioxide, methane, and nitrous … enzymes in the soil and who made them. Based on data reported in the April issue of Soil Biology and Biochemistry … than expected. The transcriptome data had suggested about a 50/50 split between fungal and bacterial enzymes. …
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Nikos Kyrpides
… (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes … Inc. in Chicago, IL. He did his postdoctoral studies with Carl Woese at the University of Illinois at … at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for … Alternate Metabolic Pathways And there is something special about these new lineages recently tied to methanogenesis. … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Help from Citrus’ Bitter, Hardier Cousin
… disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never heard of trifoliate orange. Otherwise known as  Poncirus trifoliata , it’s an evolutionary … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm plant host … fungi can form such symbiotic partnerships. To learn more about these other plant-fungal relationships, an … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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