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Accelerating Metagenomics Discoveries with Deep Learning
… (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to … workshop, Volkan Sevim, a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of …
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Waiting to Respire
… other than photosynthesis to gain and harness energy. As reported January 28, 2019 in Nature Communications , two … popularizer and communicator (and at one time, the spouse of Lynn Margulis). The information was then used to … of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus …
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User Support Analysis Group
The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse … development of automated analysis pipelines for standard sequencing products performed at scale. Our group also …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a … is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI … individual genes, whole pathways, genome-editing tools, and reporters.” JGI-developed genetic engineering technique …
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Daniel Udwary
Dr. Udwary serves as a computational biologist for JGI’s Secondary Metabolites group. His research interests lie in use and development of bioinformatics tools for elucidation … "Natural Prodcast" podcast, a "fireside chat"-style podcast about natural products and the science and scientists of …
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I-Min (Amy) Chen
… her Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and … currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of … updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, Palaniappan K, Ratner …
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High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512
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Network Modeling of Complex Data Sets
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Representing sex chromosomes in genome assemblies
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… 2013 Nature paper , which uncovered nearly 30 major previously uncharted branches of the tree of life. A senior scientist at … Lab), Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the …
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Fungal Friends or Foes in Plant Roots
… fungi can form such symbiotic partnerships. To learn more about these other plant-fungal relationships, an … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of Science of the U.S. DOE under Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: Deep-sequencing …
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Metabolic and evolutionary responses of Clostridium thermocellum to genetic interventions aimed at improving ethanol production
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