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Evolution of a Fungal Gene Expression Regulator
… but is not well understood in fungi. A team of researchers reported on the largest analysis of 5mC distribution across … the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may … least one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of …
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Synthetic Biology Lab
… and assembly group: Our production group operates as user facility that aims to provide access to … and assembly technologies to the broader community.  We focus our efforts on integrating database mining and sequence … constructs such as those involving biosynthetic clusters, or high complexity combinatorial libraries.  We have …
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A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules
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Trent Northen
… leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental … Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and … products. Proceedings of the National Academy of Sciences. 2021 May 4;118(18). https://doi.org/10.1073/pnas.2019855118 …
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Tapping the treasure trove of atypical phages
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… microorganisms for biofuel production and other sustainable applications. Summary Hot springs are … A recent study published in  The ISME Journal     focused on a class within  Chloroflexota called  … biofuel production. … The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  …
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Gene Expression: From On-Off Switch to Dial
… approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of … addition, the team says that this experiment outlines a roadmap that is transferable to other systems, expanding the … the realm of bioenergy optimization. Summary Life is all about balance. This study,  recently published in the  …
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Chomping Toward Better Plastic Recycling
We know all kinds of things about plastic – except, how to break it down for recycling. …
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Access to Rock Star Scientists
Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The students’ research … so nice and helpful.”     Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and really open to talking about their work. It’s fun to be around people who are …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… established and emerging scientists from academia, industry, and government organizations for three days of scientific presentation, interactive panel discussions, workshops, and informal networking events. JGI will … center talk and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your …
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Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting
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Gut Fungi: Unexpected Source of Novel Chemicals
… off early from aerobic fungi, which can breathe oxygen — just like we do. Oxygen is a rich source of energy, and … Neocallimastix californiae , and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department …
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