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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal Nature . The mushroom has a symbiotic relationship with the poplar, a JGI …
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Learning to Look
Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … Waldo will have all of these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … will help solve energy and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the … microbes like bacteria, algae and protists, all kinds of viruses impact many ecological processes, including carbon …
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Virus-Microbe Interactions of Mud Island Mangroves
… student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research … at one of the DOE national laboratories or national user facilities. Baker had worked with the JGI through a … I wanted to incorporate that CSP, but also look at how viruses might be influencing the methane cycling within these …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … sorghum’s survival secrets could change not only how we use and grow sorghum, but other important crops as well. In … of sorghum projects at the JGI: 2009: JGI and collaborators use whole-genome shotgun sequencing to analyze the …
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Rex Malmstrom
Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he developed a high … bacterial cells and amplifying their genetic material, thus bypassing the need to culture these microbes in the lab. …
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Tanja Woyke Elected to American Academy of Microbiology
… (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for … Lab’s 2015 Women @ the Lab honorees. Woyke’s research focuses on developing and harnessing single-cell methods to … of features such as a new genetic code. More recently reported in Nature , she led a team that reconstructed more …
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I-Min (Amy) Chen
… her Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and … Genomes (IMG) family of systems. Before joining LBNL in 2006, she was Director of Application Development Systems at … S et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … production in other algae that may be more viable for sustainable biofuel production. The JGI published a partial … been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference genome is cited …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior … to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of numerous genomic resources that fostered the widespread adoption …
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Benjamin Cole
Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light … day. At the Joint Genome Institute, Dr. Cole’s research focus has been on understanding how microbes can colonize plant … … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic Institute (B.S., 2006) … List …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director for Computational … and evolutionary biology. Dr. Rokhsar’s research is focused on understanding the origin, evolution, and diversity … developmental biology. In addition to this evolutionary focus, his work on plant genomics is targeted towards the …
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