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Changing expression patterns of TonB-dependent transporters suggest shifts in polysaccharide consumption over the course of a spring phytoplankton bloom
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Microbial Metagenomes Across a Complete Phytoplankton Bloom Cycle: High-Resolution Sampling Every 4 Hours Over 22 Days
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Gotta Catch 'Em Gall
… called galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these weird little pods. …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… their schedules were filled with trainings that they later reported were incredibly valuable to their careers going forward. Watch this short video (below) to hear more about the summer from their own perspectives. The interns … JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and mentor Vy …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… enzyme family evolved across 90 species. “One unique thing about this work was our focus on all the kingdoms, including animals, plants, bacteria, … nitrogen metabolisms can be so varied.  As evolution has progressed, organisms have developed metabolisms that …
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Digging into Microbial Ecosystems Deep Underground
… in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important role in the cycling of … Amundson at Colorado State University have many questions about the microbial communities deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re …
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Accelerating Metagenomics Discoveries with Deep Learning
… (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to … workshop, Volkan Sevim, a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of …
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Alabama A&M Interns Access An Abundance of Knowledge
… an internship program to bring students to the JGI for research training experience. Enabled by the DOE … fellow interns and scientists alike. Want to learn more about their experience? Watch the short video below. Video … fall for my master’s in plant soil science and my career focus is plant breeding. Ti’Yanna Watson: My mentor is Dr. Yi …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State University campuses for …
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Annual Genomics of Energy & Environment Meeting
Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting! The JGI convenes this annual gathering of leaders from diverse …
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Partnerships: Myco-Ed
The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based Undergraduate Research … DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The … analysis.  MycoCosm provides data and tools via a graphical user interface, ensuring that no programming knowledge or …
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A One-Stop Shop for Analyzing Algal Genomes
… an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, … genetic underpinnings responsible for these traits takes us closer to harnessing algae for bioenergy and the greater … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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