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The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata
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Trent Northen
… leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using …
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A Step Toward Controlling Soybean Rust
… is the world’s leading soybean producer , and soybeans are used to produce biodiesel. The fungus  Phakopsora pachyrhizi causes Asian Soybean Rust (ASR) … to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome …
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A Complex Confection Decoded: Sugarcane Reference Genome
… the location of genes that provide resistance to the brown rust disease that can devastate a crop. The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … for the sugarcane cultivar R570 has been generated and  reported in the journal  Nature . The work led by …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect … a cysteine protease involved in capsid maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the …
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Complete genome sequence of Vulcanisaeta distributa type strain (IC-017T)
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … Watch the short video here to see what they had to say about their experiences and what they’ll take with them as …
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Genome sequence of the Trifolium rueppellianum - nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012
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Tanja Woyke Elected to American Academy of Microbiology
… Congratulations to the JGI’s Tanja Woyke , who has been elected to the American … Lab’s 2015 Women @ the Lab honorees. Woyke’s research focuses on developing and harnessing single-cell methods to … of features such as a new genetic code. More recently reported in Nature , she led a team that reconstructed more …
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A Sorghum Pangenome Opens More Doors to Discovery
… development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource for … Biotechnology Genome Sequencing Center and a member of the JGI Plant Program. Lovell was a senior author on this work … how we think of things that we thought we knew everything about,” said Lovell.  In future work, a pangenome offers …
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Accelerating Metagenomics Discoveries with Deep Learning
… workshop, Volkan Sevim, a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … on amino acid sequences.) Sevim is currently using HMM profiles of protein domains from the pfam database to test …
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Logos and Templates
… The JGI Style Guide offers tips on JGI logo usage - please follow these guidelines. Logos JGI logo – stacked JGI logo – horizontal JGI logo – indicia …
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