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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA … requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but currently require input in the ~ 30 – … depth required). Methylation detection currently only works using subread data, PacBio is working on support to use CCS …
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JGI on the 2021 Highly Cited Researchers List
… Nikos Kyrpides Dan Rokhsar Simon Roux Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of … with switchgrass biology. The information could be useful toward the DOE’s interest in harnessing the crop … (Watch SCGSR fellows Nick Reichart and Ian Rambo talk about their experiences at the JGI.) Igor Grigoriev hosted …
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Mining Metagenomes for Cas Proteins
… The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short Palindromic Repeats … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences were then … across many areas. In particular, gene editing is being used to develop drought, flooding, pest-resistant, and …
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Gut Fungi: Unexpected Source of Novel Chemicals
… off early from aerobic fungi, which can breathe oxygen — just like we do. Oxygen is a rich source of energy, and because anaerobic fungi can’t harness it, scientists long held … source of antibiotics. Indeed, these anaerobic fungi may be using these compounds for self-defense. But the compounds …
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How Maize Makes An Antibiotic Cocktail
… a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays … scientists have identified at least 15 zealexins, they suspect there are even more to find. Zealexins are produced … a dozen enzymes. But researchers have now revealed that just a handful of enzymes are needed to transform zealexins …
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Hiroshi Otani
… particularly actinomycetes. His research activity is focused on developing and implementing new technologies and … Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. Otani H, … governs the principal sigma factor in Streptomyces griseus. Mol. Microbiol. 87, 1223-1236. PubMed …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a host, and not just any host will do. It must be a … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… of California (UC), Merced graduate student working with  Susannah Tringe , JGI’s User Programs deputy and head of the Microbial Systems group … and Methane Production in California’s Canal System,” focuses on anthropogenic impacts on wetland microbiome … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the … environmental changes. The program lays the groundwork for sustainable solutions to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe … of plants’ biological and ecological roles to foster sustainable solutions for energy, agriculture and the …
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Webinar: Introducing the BioSANS capability
… instrument when applying to the FY2022 EMSL-JGI FICUS call for proposals. Presentations from: Scott Lea, EMSL’s … “Solar Energy Conversion in Cyanobacterial Membranes” Marcus Foston, Washington University in St. Louis on “Integrated … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Improving the Cacao Genome and Phytozome
… annotation was developing a high quality node for cacao used for systemic orthology to enable use for both cacao functional biology and breeding.     … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Promoting the Power of Viral Metagenomics
… have been forced to confront the awesome power that viruses have to affect nearly every aspect of our daily lives.  But for researchers who study viruses that infect organisms much smaller than humans, like … at all.  In fact, even in non-pandemic times such viruses are well known to play major roles in a vast range of …
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