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Frederik Schulz
Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages … and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the …
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Better Living Through Bioenergy
… are a way to kick our addiction to fossil fuels. In this episode, we peek into how scientists Aindrila Mukhopadhyay and Steve Singer … research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This highly hands-on workshop is designed to …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
P. psychrophila genes drive resilience when salinity fluctuates. The Science The Arctic microalga … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … ( The annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds …
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Zhong Wang
Research in the Analysis R&D group focuses on developing new bioinformatics solutions to support JGI in adopting new genomics technologies, scaling up …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field studies related … Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the … Associated Microbes and Parasites. Ul-Hasan credits her JGI-UC Merced summer internship for helping lay the …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used … Associate Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … 150 archaeal viruses had been previously identified. The JGI researchers surveyed publicly available data in the …
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You Can Move, But You Can’t Hide
Researchers at the JGI develop a tool to quickly and accurately identify mobile … forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  … approach. The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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Effects of Polar Light Cycle on Microbial Food Web
… change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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