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Natural Prodcast Episode 3: The Primer, Part 3
… out, you probably want to go back and listen to the first two parts ( part 1 is here and part 2 is here ) so you … able to explore DNA sequencing and actually get to the DNA sequence – sequences for the genes that code for the … Something that’s you know …  ALISON: Central! DAN: That’s why they called it that! But for, maybe, people who are less …
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Natural Prodcast Episode 4: Nancy Keller
… that got me into natural products to be truthful. So, well, two things. My PhD work was with a fungal pathogen called … out introns and dealing with, you know, weirdness in the sequence. You know, some clusters are not clustered…   … it so easily with fungi. So…   NANCY: Yeah, I don’t know why. For example, with that – actually there’s a good talk …
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Metagenome Program
… regulation, and noncoding RNAs in microbiomes. The insights from this work have the potential to drive innovations in … Exploration of phylogenomic novelty: Advances in metagenomic sequencing, assembly and … of complete or near-complete population genomes directly from the environment. These advances have led to …
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Natural Prodcast Episode 9: Roger Linington
… mining, and how we might start to better connect those two things, because I think that’s ultimately what needs to … Apple Podcasts or wherever you’re getting this and tell me why you’re listening. DAN: But, now, here’s Natural Prodcast … And that’s been followed by developments in pulse sequences and improvements in the ways in which you acquire …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … the global ocean. Instead, they sharply delineated into two big geographical groups: those in colder, polar waters, … beneficial findings, like antibiotics, pharmaceuticals, and novel enzymes that function at low temperature.” said Katrin …
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FICUS-NERSC/KBASE
… The ranked proposal list, along with a recommendation from management at JGI and the other participating … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on a regular basis, in accordance with …
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Data Policy
… For DNA synthesis projects: data are subject to a  two-year embargo starting at construct or strain delivery.  Detailed sequence information and constructs are made publicly … until publication by PIs or at a set time (most recently, two years after release to JGI portals). JGI will no longer …
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FICUS
… utilize a broad range of the capabilities across at least two of the facilities, and generate datasets beyond what … FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the project … The ranked proposal list, along with a recommendation from management at the JGI and the other participating …
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Fungal & Algal Program
… The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of Life, from an international research team in collaboration with … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and …
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Institutional User Agreements
… and delays on the work. The transfer of a proposal from one commercial institution to a new commercial … Before work can begin on proposals submitted by researchers from another DOE National Laboratory, a JGI-BDLUA ,  BDLUA … multiple collaborator proposals submitted by researchers from another Federal Agency, all collaborating institutions …
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Frequently Asked Questions: Proposal Submission
… are open to both domestic and international applicants from any institution type and at any career stage. … users are able to work with Berkeley Lab.  However, users from certain countries (Iran, North Korea, Cuba, and Syria), need DOE permission and authorization from other U.S. government agencies to work with Berkeley …
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Marine Microbe Contains Multitudes
… But SAR324 can be found throughout the water column, from the warm, well-lit surface, to the blue-lit twilight … of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … data gave the team unprecedented resolution to study the network of genes that contribute to the metabolisms that …
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