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Viral Genomics Group
… of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these … including especially metatranscriptomics, to better highlight and ultimately predict the main viral impacts in … to identify, filter, cluster, annotate, and bin viruses from metagenomes. mSystems 9:e00888-24. …
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Industry Engagement Program
… JGI serves more than 2,500 users that predominately come from the public sector: academic and government institutions … Facilities — as well as their resources. It will identify high-value partnerships among members that catalyze data … Our metabolomics platform delivers rich metabolite profiles from diverse biological and environmental samples by using …
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Institutional User Agreements
… and delays on the work. The transfer of a proposal from one commercial institution to a new commercial … Before work can begin on proposals submitted by researchers from another DOE National Laboratory, a JGI-BDLUA ,  BDLUA … multiple collaborator proposals submitted by researchers from another Federal Agency, all collaborating institutions …
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Plant Program
… agricultural productivity. Research spans diverse areas — from understanding how terrestrial plants and phytoplankton … by environmental change, focusing on plant resilience — highlighting the vulnerabilities of monocultures and the … Green Genomes (OGG) project seeks to develop comparative high quality genomes and annotations across the plant …
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Frequently Asked Questions: Proposal Submission
… are open to both domestic and international applicants from any institution type and at any career stage. … users are able to work with Berkeley Lab.  However, users from certain countries (Iran, North Korea, Cuba, and Syria), need DOE permission and authorization from other U.S. government agencies to work with Berkeley …
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Natural Prodcast Episode 1: The Primer, Part 1
… Laboratory. Being a User Facility means that scientists from all over the world bring us big problems related to … stories about natural products, so you can get a feel for why I think they’re so important, and we’ll start to explain … more about some of the background and sort of the reasons why we want to do this. And also to provide a little more …
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Natural Prodcast Episode 3: The Primer, Part 3
… maybe it’s a new culture of a new bacteria that you pulled from the soil, maybe it’s, you know, we talked about … able to explore DNA sequencing and actually get to the DNA sequence – sequences for the genes that code for the … Something that’s you know …  ALISON: Central! DAN: That’s why they called it that! But for, maybe, people who are less …
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Metagenome Program
… The Metagenome Program focuses on the high-throughput sequencing of microbial communities to … regulation, and noncoding RNAs in microbiomes. The insights from this work have the potential to drive innovations in … of complete or near-complete population genomes directly from the environment. These advances have led to …
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Biodesign
… capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … platform enables users to validate hypotheses generated from mining genomic data by designing and assembling … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… ones, a trend that threatens to destabilize the delicate marine food web and change the oceans as we know them. At … photosynthesizing organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem …
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Data Policy
… embargo starting at construct or strain delivery.  Detailed sequence information and constructs are made publicly … Proposals accepted before FY22 are transitioning away from producing use-restricted data. JGI proposals typically … project level to expedite the change in data policy. Data from projects for which JGI has not yet received samples as …
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Examples: Successful LOIs & Submissions
… calls. These documents have been shared with permission from the PIs who drafted them.  … Characterization of simplified soil communities with high and low carbon use efficiency across differing moisture …
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