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Identification of Cellulose-Responsive Bacterial and Fungal Communities in Geographically and Edaphically Different Soils by Using Stable Isotope Probing
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HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi
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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing
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Natural Prodcast Episode 1: The Primer, Part 1
… even though the science in that Facebook post is probably more than a little fuzzy. The natural products – or … the Primer as a much longer conversation, which I cut into more digestable pieces. If you’re an expert in the field, you can …
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Natural Prodcast Episode 7: Ben Shen
… natural product molecule around that. That’s sort of a semi-stable configuration of electrons that becomes really … – the enediyne compound that people know, as a family, it’s more than 7 decades. So, this family of substances is always … of the natural product. So that was my PhD study, and then towards the end of my PhD study, then recombinant DNA …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between bacteria … research studies that use SIP. Researchers at Lawrence Livermore National Laboratory and the U.S. Department of Energy … Work at Lawrence Livermore National Laboratory was conducted under the auspices of …
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Natural Prodcast Episode 18: A CSP Primer
… you’ll recognize this material, though my show is a little more free-form, and this is the longer cut of the discussions you may have hear over there, with a few more questions specific to secondary metabolites. I hope … somebody has a resequencing project. For example, people do experiments where they involve a population in the lab under …
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Natural Prodcast Episode 6: Marc Chevrette
… project, which you’ll hear him describe. [ Go here to learn more about Tiny Earth and the JGI’s role in the project by … years before joining Warp Drive. And what kind of pushed me towards the secondary metabolism side of things was looking … papers have steered me in that direction a little bit more. Toward mosaic theory. MARC: So how quick, and how much …
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FICUS
… at EMSL and JGI provides background on the various isotope-related technologies available at JGI and EMSL such … Protein SIP, Flux Balance analysis with metabolites, Isotope Ratio Mass Spectrometry, NanoSIMS, and other …
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Quantitative DNA Stable Isotope Probing Identifies Active Microorganisms Assimilating Volatile Fatty Acids in Full-Scale Enhanced Biological Phosphorus Removal Processes
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… is free. The JGI supports remote users. Users conduct experiments in their own labs or collect field samples. … . While we expect most projects will focus on one or more elements in the CMM lists, it may be possible to make … Fungal genomes, for instance, can take up to a year or more to complete. Having that optional 12-month wait period …
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