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Description of Candidatus Mesopelagibacter carboxydoxydans and Candidatus Anoxipelagibacter denitrificans: Nitrate-reducing SAR11 genera that dominate mesopelagic and anoxic marine zones
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JGI Portals
… Notices Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any inconvenience. … Portal was replaced with the Data Portal and sunset in 2026. The Genome Portal was designed to provide unified access …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) … (hours)**   Actual Total   Actual % Goal   FY 2026 Total   700.0     8,760     Q1 2026 175 313.081 179% 2,208 2,064 95.4% Q2 2026 175 243.806 139% 2,160 2,112 99.8% Q3 2026 175     2,164     Q4 2026 175     2,208   …
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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
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Rex Malmstrom
… Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. … photosystem to unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria … Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, …
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Microbiome Data Science Team
… the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with … the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and host …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… Serve the Changing Planet (download a copy at jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of … In service of solutions that will impact society, the 2024 strategic plan introduces the JGI’s new vision to lead …
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Events
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Finding the Fermenters
… researchers recently compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. … is seen in a third of prokaryotes and can form roughly 300 combinations of metabolites. To demonstrate the potential … datasets. One test was to predict traits of more than 400 cultured rumen prokaryotes from the  Hungate1000 project …
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JGI announces 2025 Functional Genomics awardees
… and biotechnology innovation. Below find a list of the 11 researchers accepted for 2025.  Proposals are accepted year-round ; the next deadline …
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JGI Welcomes New UEC Members
… and career stages. The election period concluded on October 21. The results are in and JGI extends a warm welcome to the …
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