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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San Diego, Calif. Representatives from … and how you can use the KBase system to accelerate your plant genomics research. Click here to download a list of …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … the special, natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. … tree and became incorporated. And because it had some advantage to the tree – it almost certainly, you know, prevents …
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A Plant Root Atlas for Tracking Developmental Trajectories
… scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in … research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … product chemistry? BEN:  Yeah. So, I was trained as a plant natural product chemist. When I first started in …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … could be a reasonable number if you are talking about a plant and a microbe interacting very stably. So it makes … the fungal farms from other fungus that want to take advantage of that resource. So in those type of situations, what …
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … chemicals that are coming out of organisms, whether it be a plant or from the bottom of the ocean, from a sponge, or a … marine natural product biosynthesis and at the beginning stages of connecting molecules and genes. And then genomics …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate …
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Primer and platform effects on 16S rRNA tag sequencing
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located … Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative Genomics … to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics through its data portals. …
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Natural Prodcast Episode 12: Nadine Ziemert
… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot of … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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