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What Happens To a Rainforest When You Dial Up Drought?
… happens to that storage when a rainforest hits a drought. Tag along with their experiments in a fully enclosed, human-made ecosystem: Biosphere 2.      …
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Microbiome Data Science Team
… the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes … (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … a paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … and archaeal cells — and detected the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a microbial community …
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Tapping the treasure trove of atypical phages
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JGI Portals
… … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all … and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to eventually replace … comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, …
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Protocols
Weight DNA extraction: … RNA Extraction Protocols: … iTag protocols: …
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Game On: High School Students Drive Everglades Metagenomics Study
… her thoughts about the experience below. In the summer of 2018, Jonathan Benskin was preparing to teach a second year … email request reached  Emiley Eloe-Fadrosh , the Metagenome Program Head at the  U.S. Department of Energy … a deeper understanding of both the research process and metagenomics while legitimately contributing to the body of …
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Accelerating Metagenomics Discoveries with Deep Learning
… in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole … deep learning to automatically generate insights from metagenomic data. In deep learning, a branch of machine …
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Frederik Schulz
Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His … sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and …
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Uncovering Novel Genomes from Earth’s Microbiomes
… in a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental … Lab), and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the …
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