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Secondary Metabolites Program
… not essential for fundamental growth, provide critical advantages to the organisms producing them, and are often … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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What Happens To a Rainforest When You Dial Up Drought?
… happens to that storage when a rainforest hits a drought. Tag along with their experiments in a fully enclosed, human-made ecosystem: Biosphere 2.      …
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Microbiome Data Science Team
… the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of new genes with … Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. … Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of viruses in …
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DAS Tool for Genome Reconstruction from Metagenomes
… validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging … changes. Summary Researchers have been utilizing metagenomics as a way to study a collection of … of the Emerging Technologies Opportunity Program in 2013, a team of researchers has been working on improving …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … and archaeal cells — and detected the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for … User Facility, is supported under Contract No. DE-AC02-05CH11231. JRS is supported by the NASA Astrobiology …
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Webinar: MycoCosm Tutorial
… ) on PhycoCosm tree with several sequenced genomes. 2.  Q: How exactly EcoGroups are built? A: EcoGroups are … there a tool in this platform to search fungal genomes in metagenomes? A: Search in metagenomes is available from … A: Absolutely! 12.  Q: Is it possible to use the Browse page tool to compare your own data with the JGI database? A: …
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New and Improved: Eucalyptus Reference is Now Accessible
… | Genetics , with significant advances compared to the 2014 Eucalyptus grandis reference genome that has been … have relied on the E. grandis reference genome published in 2014 by a team led by University of Pretoria scientists with … genome assembly and annotation. Genome contiguity of the 2025 phased reference and 2014 diploid genome reference was …
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Protocols
… iTag protocols: …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … a paper in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists …
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Tapping the treasure trove of atypical phages
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a microbial community …
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