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JGI Contributes Eight to 2023 Highly Cited Researchers list
… were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the … the discovery of anaerobic fungi’s ability to break down lignin , the hardiest of plant components and a key barrier …
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Tracing the Evolution of Shiitake Mushrooms
… — cellulose, hemicellulose, and the toughest molecule, lignin. Understanding Lentinula genomes and their evolution …
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Igor Grigoriev
… of California, Berkeley, CA … Lankiewicz et al (2023) Lignin deconstruction by anaerobic fungi.  Nature Microbiol. … 59-65. Floudas D et al. The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes.  …
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How Filamentous Fungi Sense Food
… this fungus breaks down plant cell wall materials including lignin, cellulose and hemicellulose. The Impact N. crassa is …
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Tapping the treasure trove of atypical phages
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Natural Prodcast Episode 24: Jackie Winter and SMC
… mentor students, teaching classes, and really setting the stage for what I really wanted to do and getting to– so I … rest of the archaea and fungal genomes and then work on metagenomes. So yeah. So we’ve taken every public sequence … it’s a very long process in order to go from the first stage of discovery to a molecule that’s actually helping …
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A Shrubbier Version of Rubber
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Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading Consortium
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … National Laboratory, to create the database. JGI provided metagenome and metatranscriptome sequences, as well as … fungi are breaking down plant fibers, like cellulose and lignin. Bacteria, on the other hand, appear to be ignoring …
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Natural Prodcast Episode 22: Alison Narayan
… nature does this with such elegance And also to take advantage of the biological properties that these molecules have … to test that hypothesis through site-directed mutagenesis, we would end up with dead enzymes. So often, when …
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Antisense Down-Regulation of 4CL Expression Alters Lignification, Tree Growth, and Saccharification Potential of Field-Grown Poplar    
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Natural Prodcast Episode 18: A CSP Primer
… a mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. So … also have a lot of analysis pipelines, be it for, again, metagenome, metatranscriptomes for SNP analysis if somebody …
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