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JGI Advisory Committees Code of Conduct
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Viral Genomics Group
Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host prediction … phages.  Current Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions — how big …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The … its history. Their research, published in  August 2023 in  Nature Plants , was able to assess absolute time … Data Science (grant number HIDSS-0005) and by a grant to J. Eisen, J.J.S. and J.L.O. from the US Department of Energy …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
On February 17, 2021, JGI and the Environmental Molecular Sciences … to contact? A:  Contacts are listed on the proposal call page. Feel free to  reach out to any of them with questions. … range from traditional single cell sequencing and mini-metagenomics to more targeted approaches, such as …
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Exploring Phages at JGI
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome … advice but declined to offer actual scientific help,” said Jonathan Benskin, who teaches the A-Level Advanced … system, reached  Emiley Eloe-Fadrosh , who heads the  Metagenome Program . “After discussing the project with him, I …
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Natural Prodcast Episode 3: The Primer, Part 3
… and listen to the first two parts ( part 1 is here and part 2 is here ) so you understand what’s happened so far in the … me to check her stat and she was absolutely correct. Since 2010 there have been eight new antibiotics added to the … from your cultures, but then you’re going to find another 20 or 30 secondary metabolism pathways that you didn’t even …
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, … such as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … and archaeal cells — and detected the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … of stable, synthetic microbial communities to take advantage of their joint metabolisms. Because, together, microbes …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) … see this  Metabolomics Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile …
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A Shrubbier Version of Rubber
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