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A More Intuitive Phytozome Interface
… plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the current, and only, version of Phytozome accessible as an interactive website. Since May 2019, … interfaces they have come to rely on from Phytozome, with a more intuitive interface, deployed on much more maintainable …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the … by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews … (SIMB) Natural Products meeting earlier this year. And today we have our conversation with Professor Alison … this description, but I’d say that Alison is not one of the more normal kinds of natural products people we usually talk …
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Special Initiatives & Programs
… All JGI products are available through BERSS. Learn more about our  offerings, capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis requests, the … request falls below these thresholds, you will need to utilize a core facility instead. Proposals may not exceed …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… of viruses in the same drop—the vast majority not harmful to humans could be even larger. Viruses infect bacteria, … at Lawrence Berkeley National Laboratory (Berkeley Lab) uncovered a broad diversity of large and giant viruses that … tree of giant viruses. Metabolic Reprogramming a Common Strategy for Large and Giant Viruses Another significant …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … follow the steps outlined below. Click the drop-downs to learn more about each step in the process. If you have any … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and …
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A Sorghum Pangenome Opens More Doors to Discovery
… sorghum varieties, a resource for breeders and researchers to harness the traits that let this biomass powerhouse … thrive. Within its genome, Sorghum bicolor holds keys to drought and flood resilience, biomass production for … insight into drought tolerance, biomass production and more — however, a single reference genome shows only one …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … – the enediyne compound that people know, as a family, it’s more than 7 decades. So, this family of substances is always … genomic revolution, to me, as a natural part chemist for microbial natural product, is that I love microbial natural …
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The More the Merrier: Making the Case for Plant Pan-genomes
… evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids … lose many genes after such events, returning their genomes to a diploid state while retaining multiple copies of some …
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Biodesign
… Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by synthesizing … tools — including strain engineering — to make them more user accessible Synthetic Biology Informatics Group : a … Check out our organism-agnostic CRISPR gRNA design tool  …
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Toward More Efficient Artificial Photosynthesis
… Chloroplast mimic a platform to capture and utilize carbon in a synthetic fixation cycle. The Science Chloroplasts are the factories in plant cells. Using photosynthesis, they take raw … to develop an artificial photosynthesis pathway that would more efficiently remove carbon from the atmosphere than …
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Natural Prodcast Episode 18: A CSP Primer
… If you stick around for the next few months, you’re going to hear my last interview with my co-host Alison Takemura, … you’ll recognize this material, though my show is a little more free-form, and this is the longer cut of the … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have …
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