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Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01
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Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps
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Partnerships: Adopt-A-Genome
… the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome … builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or …
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Natural Prodcast Episode 15: Katherine Duncan
… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk … blockbuster metabolites, like astaxanthin, that make your farmed salmon pink so that you buy that in the shop. And … of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the …
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Metagenome-assembled genomes from microbial communities producing lactic acid from dairy residues
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Construction and comparison of three reference‐quality genome assemblies for soybean
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Fungal & Algal Program
… and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and … that enable fungi and algae to play a vital role in carbon cycling, biodegradation and biogeochemistry. This research helps translate their … play a critical role in ecological processes such as carbon cycling, biodegradation and biogeochemistry. The …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene …
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Metagenome Program
… to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work … The Metagenome Program focuses on the high-throughput sequencing of microbial communities …
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Natural Prodcast Episode 7: Ben Shen
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hello, and welcome back for Episode … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very … And in DNA is all that the same molecule, just different sequences BEN: The other thing I think about JGI is, really, …
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High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have … plant pathogen species, Phytophtora sojae, which imperils soybean harvests. The subsequent comparative analysis of … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop …
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