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SoyDB: a knowledge database of soybean transcription factors
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Partnerships: Adopt-A-Genome
… the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome … builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or …
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Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01
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Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to … proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … interested in learning more about the fungal endophytes of soybean and how they deter two significant pathogens, the …
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Natural Prodcast Episode 17: Cassandra Quave
… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … culture-disconnected. Like we’ll take some soil samples and sequence all the bugs out of that or whatever. And so I was … to have a physical copy of the plant, a physical specimen pressed and stored and authenticated by a botanist. And …
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Construction and comparison of three reference‐quality genome assemblies for soybean
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Frequently Asked Questions: Project Management
… Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA Synthesis projects: Miranda Harmon-Smith Metabolomics projects: Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including a downloadable …
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Fungal & Algal Program
… and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and … that enable fungi and algae to play a vital role in carbon cycling, biodegradation and biogeochemistry. This research helps translate their … play a critical role in ecological processes such as carbon cycling, biodegradation and biogeochemistry. The …
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High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have … plant pathogen species, Phytophtora sojae, which imperils soybean harvests. The subsequent comparative analysis of … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene …
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