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New Lineages of Life Group
… Our research is focused on the discovery and characterization of … bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for … ONGOING ONGOING CLOSED Who Should Apply? Investigators with research projects that integrate the expertise and capabilities of multiple user facilities Investigators with DOE …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. … sustainability, and many other applications. By understanding how microbes contribute to ecosystem …
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Workforce Development & Education Outreach
… Outreach at JGI takes many forms: We offer internship opportunities through working directly with specific universities, continuing education programs in … hands-on learning opportunities and ultimately, an understanding of the JGI’s role in enabling complex … The JGI and UC Merced have had a long-standing internship partnership that started in the summer of …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of … the Sequencing Technologies team, relies on collaborations with Science Programs and Operations teams to enable the … genomes. This technology has been further scaled to a multiplexed DAP-seq (multiDAP-seq) method allowing …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … Studying bacteria and archaea, including those associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and … sequencing technologies to explore microbial diversity — with an emphasis on bacteria and archaea, and including …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … 2 of our “primer” episode, so if you ended up here somehow without having listened to the first part, you might be a … of secondary metabolism in the environment, and, sort of, understanding – like we’ve talked about – how bacteria or …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … metabolism – field, though, is real, and it’s a field with very real and truly amazing science with a long … has recognized how important natural products are to understanding the natural environment, and so our Director, …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway … DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, … clones if low number of variants, or pool of variants with sample sequencing to predict the number of successful …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a joint Critical … Submit research proposals  here that integrate genomics with nanoscale science, accelerating discoveries and … subsequent processing from that point. JGI provides users with various outputs free of charge, including data such as …
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … genetics (RB-TnSeq), and computational genomics to better understand the plant-associated terrestrial world. Research …
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