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… CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other … (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . …

… proposals, sample and project metadata, and to access JGI tools and systems. … listed on the “info” page for that organism on the Genome Portal . … You can view the status of all public projects on the JGI Genome Portal . The PI and all authorized users can also …

… information into actionable insights and solutions. Genome-enabled biology provides solutions to strengthen …

…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric … We provide access to large-scale datasets and analysis tools for genomes, metagenomes, and metabolomics through its …

… A tall native plant of the North American prairie, switchgrass ( Panicum virgatum ) has long been a tantalizing potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. …

… that will help solve energy and environmental challenges. Switchgrass is a native, shrubby grass that can grow … biofuels . For its importance to the DOE mission, switchgrass is among the JGI Flagship Plants . Since 2007, … crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … relationships and to provide valuable reference genomes in under-populated areas of the tree of life, as reference genomes are critical to serve as phylogenetic anchors for …

… rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies … from complex metagenomes than any of the single binning tools alone,” primarily because of its capacity to harness … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of …

… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … around drug discovery, which includes screening methods, genome mining in cave microbiomes, and using engineered … an undergraduate and not succeeding and still using all the tools from mechanistic enzymology to natural product …