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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … that I wanted to include it. This is a conversation with Marc Chevrette. Marc is a postdoc in Jo Handelsman’s … to put it. So, I was at the Broad Institute in Cambridge, Mass. for a couple years before joining Warp Drive. And what …
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Workforce Development & Education Outreach
… to enter the STEM workforce by fostering an understanding of our role in advancing the energy and environmental … internship partnership that started in the summer of 2014. … Modeled on the JGI-UC Merced internship program, a similar collaboration with AAMU was launched in 2024.  … The CalTeach Summer …
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CoverM: Read alignment statistics for metagenomics.
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … and exa- scales on multicore and many core architectures with the ultimate objective of facilitating omics-based … (ANI) and fraction of orthologous genomic regions (Alignment fraction, AF) have been computed for nearly 28,000 …
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Natural Prodcast Episode 22: Alison Narayan
Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … rich, and you can really just learn so much, which then enables you to ask bigger questions and accomplish bigger, … that, but on– DAN UDWARY: On a big scale. ALISON NARAYAN: –massive scale, and then we’ll have that information for …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … and listen to the first two parts ( part 1 is here and part 2 is here ) so you understand what’s happened so far in the … drug discovery train moving, drug companies started working with some techniques referred to as “combinatorial …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … we can then see changes. And we're primarily doing this by mass spec seeing different levels go up and down. We're … Cyclic Peptides Synthesis of Gamma-Butyrolactone Hormones Enables Understanding of Natural Product Induction Betsy's …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … out every two weeks. This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute in … and hundred thousand fungal strains, that will generate a massive amount of data that current technology has never …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, you’re going to hear my last interview with my co-host Alison Takemura, who’s moved on from JGI to … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … Microbiome. 5 (1), 1-6 Schulz et al. (2017) Giant viruses with an expanded complement of translation system …
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User Support
The JGI Project Management Office carries out a number of activities to facilitate … world-class science. DOE JGI Project Managers collaborate with users to develop project requirements, define the scope … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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