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Project Management Office
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works … staff to onboard users and guide them through the process of working with our facility. This includes help with: … Please review our FAQ in advance of contacting the PMO office.  …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … NIGEL MOUNCEY: Oh, sure. I think our legacy obviously is in sequencing.  DAN: Of course.  NIGEL MOUNCEY: Sequencing the … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Frequently Asked Questions: Project Management
… You can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about … proposal calls and proposal submission, as well as examples of approved proposals, please visit the Proposals FAQ .  …
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Leveraging single-cell genomics to expand the fungal tree of life
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Diversity of cytosine methylation across the fungal tree of life
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether or not anyone registers … “Now with these new tools — metatranscriptomics, RNA sequencing of soil RNA — we can access — ‘What are they …
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The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.
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Secondary Metabolites Program
… Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and … their potential applications in the bioeconomy including biofuels, biochemicals and sustainable agriculture. …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … episode is our conversation with Nancy Keller, a fantastic fungal natural products researcher from the University of … everything is funding, right, isn’t it? I thank JGI for sequencing a lot of fungi. But the thing with them – to get …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … (Berkeley Lab), has generated a more accurate phylogenetic tree tracking the evolution of  Dothideomycetes fungi. The  …
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Mapping the Earth’s Hidden Fungal Kingdom
… fungi remain largely mysterious. Only about 200,000 fungal species have been named. Among those sequenced, … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … nearly 2,000 genomes to construct kingdom-wide evolutionary trees and overlay them with genomic features. This allows …
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User Support
… The JGI Project Management Office carries out a number of activities to facilitate … that will be subject to the DOE JGI’s capabilities for sequencing, synthesis and/or metabolomics. Once materials … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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