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Project Management Office
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works … staff to onboard users and guide them through the process of working with our facility. This includes help with: … Please review our FAQ in advance of contacting the PMO office.  …
Learn more
Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific … supported, sample/capacity limits, and instructions.  Many of the submissions are done using web-based forms.   To view …
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Metabolomics
… this identification, metabolomics enables functional genome annotation, improves understanding of the role small molecules play in diverse biological …
Learn more
CSP Functional Genomics
… Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … Biodesign and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable … data usage by the applicant/community, and track record of the applicant.  Learn about the general review process or …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the … Or genes that you can put a name into it, some sort of annotation, but they are not really well characterized. But, …
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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … Successful applications will focus on high-risk/high-payoff proposals within the focused topic areas that can be … provides customized analysis, the JGI also participates in publication of results. …
Learn more
Biodesign
… capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables … DNA constructs:  Individually arrayed constructs, up to ~150 Kb in length  Pooled libraries such as sgRNA, promoter …
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FICUS Overview
… for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. …
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DOE Metrics
… (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY … = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† … PDF] Q3 – Report on new computational approaches for the annotation of genomic data. [Download PDF] Q4 – Report on a …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … right? BEN: Yeah, yeah. Well, we are at [10 to the] minus 12 [Molar concentration]- is sufficient to kill cells. So … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… have an E. coli strain that we’ve been working on that we sequenced the genome. And it has 17 resistant genes on a … public. Things that you do to BGCs– you can add your own annotations and do things to the data — That all becomes … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 18: A CSP Primer
… at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we … in terms of the annotate, the assembly, the curation, QC, annotation of these data sets. For our eukaryotes, in … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …
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