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… few months, you’re going to hear my last interview with my co-host Alison Takemura, who’s moved on from JGI to do real … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …

… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there and welcome back for … peptides. Those are fun, because the host organism can use whatever amino acids it has access to, which can be really … see as the overall “theme” of your research? I know you’ve generally worked in various marine organisms. Except during …

… of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the … Our location at the IGB fosters team science and collaboration with partner organizations such as the DOE …

… focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such … tree without cultivated representatives. The “Great Plate-Count Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated …

… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the series of … or unprecedented chemistry. So it’s super fun to hear about what folks are up to in a slightly different niche in … could have arisen from. DAN UDWARY: OK, so sort of a phylogenetic reconstruction kind of a thing. ALISON NARAYAN: …

… Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … that we found, indeed, that both formulations had some antimicrobial properties. But the one that was used in …

… The Facilities Integrating Collaborations for User Science (FICUS) call represents a … the capabilities across at least two of the facilities, and generate datasets beyond what each of these facilities could … provides customized analysis, the JGI also participates in publication of results. …

… of the field. I learned a lot so much history from this conversation about why the ocean was basically unexplored … the most effective application, of marine molecules in general. DAN UDWARY: Maybe can you explain to our audience … powerful people. These were people that really controlled microbial drug discovery. And a guy like me, with no …

… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) … to support open data and information sharing. We also recognize the need to have a limited and time-sensitive … of certain types of data to support their use by those generating data. The JGI Data Policy applies to research …

… the JGI serves more than 2,500 users that predominately come from the public sector: academic and government … including User Facilities like the JGI, through its Genesis Mission. Launched in 2025, the initiative aims to … via designed and assembled physical DNA constructs that can then be functionally characterized.  Our metabolomics …

… The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our … functional assay lets us move beyond cataloging the genes of microorganisms and start making quantitative … measurements that answer questions such as, “who is eating what?” and “who is active? …

… The exponential growth of DNA sequencing data, coupled with recent computational technology advances in … and visualization of “big data,” and artificial Intelligent/machine learning approaches in data analysis and … into data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. …