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Single Cell Research Group
… in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to …
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Data Ecosystem
… capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different … NMDC, EMSL and the Protein Data Bank enables predictive ecosystem biology. The collaborations present exciting … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and …
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IMG 4 version of the integrated microbial genomes comparative analysis system
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JGI-TMF Critical Minerals and Materials Call
… accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the … Data Policy . In cases where the JGI provides customized analysis, the JGI also participates in publication of results. Go here for a video and Q&A with …
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FICUS
… accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the … Data Policy . In cases where the JGI provides customized analysis, the JGI also participates in publication of results. … available from all the facilities participating in the FY25 call, introduces the available APS resources, and …
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FICUS-NERSC/KBASE
… Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological … more customized analysis, the JGI also participates in publication of results. …
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Natural Prodcast Episode 20: Brian Bachmann
… of thought with that. So some people are interested in cave microbial– people are interested in the more extreme … a good catalog of what’s out there so that we can do more comparative analysis and maybe– I don’t know– start to put … BACHMANN: Everything starts with genome mining. And a great database. DAN UDWARY: All right, awesome. So you have a …
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Mission
… in studies of complex biological and environmental systems. We optimize our service to the community through … Biological systems hold extraordinary potential to power innovation in … crops, enhance biomass conversion efficiency, and discover microbial pathways for producing biofuels, biochemicals, and …
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Micro-Scale Applications Group
… Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge … technology in order to enhance the quality of single-cell genomes and directly link functional information with … To provide additional functional insights into microbial genomes, the JGI now uses laser microdissection to …
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Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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Natural Prodcast Episode 18: A CSP Primer
… do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … for microbial genome that means an annotated genome that’s integrated into our integrated microbial genomes system, … is over, the data gets released on our portals, such as IMGM. But we also then push the data to GenBank. So the raw …
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