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Natural Prodcast Episode 17: Cassandra Quave
… audience. The hardcover version is out now in stores and online, and there’s an audio version, read by Cassandra, and … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… organisms we’re finding– at least by looking at their full genomes — are really not like anything that’s been … and InterProScan. And all of those have ended up in the SMC database. There’s a web front end for it, and it’s just a … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… them are actinobacteria. And so we get a lot of them from databases of organisms, so things like the NRL database - or online catalog, I guess. So we've also been able to get … in is actually seeing whether we could go into the genomes and predict what the natural product might actually …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Synthetic Biology Lab
… The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic … the broader community.  We focus our efforts on integrating database mining and sequence design with scaling the … methods for converting digital information from sequence databases into biotechnological or environmental …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … starts to go back up through the sediment it’ll get to this Goldilocks zone where there’s some oxygen available that has …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K …
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JGI-TMF Critical Minerals and Materials Call
… genomics with nanoscale science, accelerating discoveries and developing transformative bio-based technologies that address … provides customized analysis, the JGI also participates in publication of results. Go here for additionial information, … Foundry User Portal . All proposals undergo technical review by JGI staff as well as staff at the other …
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Natural Prodcast Episode 7: Ben Shen
… well. One is to do DNA sequencing. So upon sequencing many genomes, now we don’t have to, as in the past, go randomly … Prize in the 1950s. So this really triggers the so-called golden age of antibiotic discovery in the 50s and 60s. And, … so everybody, readers of the library, can come to our databases and look for the specific information they are …
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Standardized naming of microbiome samples in Genomes OnLine Database.
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI … nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside mitochondria, the … sequences previously unrecognized within existing public databases and recovered more than 3,000 others from …
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FICUS
… sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the Department of Energy’s … user and no granting of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases … provides customized analysis, the JGI also participates in publication of results. …
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