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JGI Portals
… expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to …
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Ocean current patterns drive the worldwide colonization of eelgrass (Zostera marina)
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable … data usage by the applicant/community, and track record of the applicant.  Learn about the general review process or …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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FICUS
… call represents a unique opportunity for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic … to soil carbon storage during simulated range shifts of plant-fungal symbionts …
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … when and how eelgrass adapted and evolved throughout its history. Their research, published in  August 2023 in  Nature … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the …
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FICUS Overview
… for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … This is the first episode of Natural Prodcast, a podcast produced by the US Department of Energy Joint Genome Institute. In each episode, we’ll be discussing the …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a … call . This represents a unique opportunity for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  … free of charge, including data such as fully annotated genome assemblies or differential gene expression results. …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … follow the steps outlined below. Click the drop-downs to learn more about each step in the process. If you have … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting …
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Project Management Office
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works with users, JGI … Please review our FAQ in advance of contacting the PMO office.  … start on any approved proposal – including the submission of samples for sequencing, or the submission of sequencing …
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