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Data Policy
PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … repositories until the earliest of three points:  (1) publication of the data (including, but not limited to, … to the 2-year use-restriction policy as described here. No single project has data under both use-restriction and …
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JGI Portals
… integrated context. IMG/M provides tools for analyzing the functional capability of microbial communities based on … over 15 million viral genomes and fragments, enriched with functional annotation, taxonomic classification, and … access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… quantities of DNA derived from individual environmental cells. The proof of principle study built off earlier … and finished genome derived from an uncultured bacterial single cell – a symbiont of the green sharpshooter. In 2012, … to experimental characterization and validation of the functional potential of these new lineages. …
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Natural Prodcast Episode 11: Marnix Medema
… efforts in paired-omics data sets and seeking to interpret function from BGCs. It’s a long, wide ranging conversation … of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And … sometimes correlated or anti correlated, also with other cellular functions in the same and as it was other bacteria …
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Natural Prodcast Episode 1: The Primer, Part 1
… that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe … great conversations that we’ve already recorded with some excellent scientists, and that’s probably how we’ll continue … they figured out that they could culture the plant cells and produce enough that way in really large like 7500 …
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Natural Prodcast Episode 16: Marcy Balunas
… bobtail squid has two organs that solely house– whose sole function is to house bacterial associates. And so the one … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … understanding its contribution to ecosystem function in the cellulolytic fungus-growing ant symbiosis JGI Community …
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Natural Prodcast Episode 3: The Primer, Part 3
… be successful. Right? Because we don’t – drugs are usually single molecules, they are not extracts. And so yeah, in … current age of secondary metabolism is that it’s very DNA-driven. Sequence-driven. Yeah, because we can find more … what those molecules actually are, and then what their function might be. Whether that’s in nature, or whether …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We … to advancing the frontiers of environmental and energy genomics. The two-story mural at the Integrative Genomics Building was painted by Berkeley-based artist Nigel …
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Natural Prodcast Episode 21: Elizabeth Parkinson
So chemicals are their way of talking. You bring up an excellent point though, and I think this is an area that is a … been shown today is it's more a quorum sensing within a single species. DAN: Within a species. Genus? BETSY … on DAP-Seq: Enlarging Windows into Understanding Gene Functions Purdue's page on mental health resources. It might …
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Secondary Metabolites Program
The Secondary Metabolites Program offers users extensive genomics, DNA synthesis and metabolomics capabilities to … (BGCs), advancing pathway analysis, optimization of cell- and cell free-based expression platforms, tools and … experimental approaches to explore the synthesis and function of these biologically significant compounds. By …
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Natural Prodcast Episode 22: Alison Narayan
… sentence. I think that sometimes, we think about enzyme function is we think about the natural function versus can we take this enzyme that nature has … can it actually turn over? ALISON NARAYAN: So that’s an excellent question. I think that we need enzymes with good …
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Natural Prodcast Episode 9: Roger Linington
So there are … You’re right. So this is a big, community driven collaborative effort that we’ve put together to try … advancement in sort of both areas. And I suspect that no single change will resolve the problem. But that stepwise … because they are selected against because of their lack of function. So knowing about the full sweep of chemistry which …
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