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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … moved from the mitochondria into the nuclear genome over evolutionary time. They also discovered more than 6,000 … (grouping sequencing reads by their likely organism of origin) followed by phylogenomic analysis to confirm genuine …
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User Support
… The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … historically are tetracycline receptors. And so they were originally, I think, discovered in E. coli, but we can … bind similar ligands. And so one of-- DAN: OK. The similar proteins are going to bind similar molecules. Yeah, OK. …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … from is, from the bark of the yew tree, is where it was originally discovered. And so that sounds great. There’s a … near this tree and so there was probably some historical evolutionary event where the DNA transferred from the fungus …
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Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium.
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … sequencing, I understand. Do you want to tell us about the origin of that, or?   NANCY: Well, so, I’m involved in two … to start looking at some of these parasite genes, and their proteins, and since this one happens to fall in my area of …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … technology described by the Nobel Foundation as having “a revolutionary impact on the life sciences.” Building upon … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  … challenges in the sourcing, recovery, and utilization of critical minerals and materials. The proposal submission … Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports remote users. …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … about natural products and the science and scientists of secondary metabolism. Hey there, and welcome back to … sub domains”, where he made a big phylogeny of all the proteins that had the protein domain. And then for every …
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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … metabolism, I find, is that even though it may not be the original intent in the proposal depending on what sample …
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Natural Prodcast Episode 17: Cassandra Quave
… Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … everywhere now. But was there any reward to the people that originally discovered how coffee could be used?  The same … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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JGI Advisory Committees Code of Conduct
… Guiding Principles All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … In working toward a shared vision with members of the JGI advisory committees, we welcome and encourage …
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