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JGI-TMF Critical Minerals and Materials Call
… for researchers to request the capabilities and expertise of both the Joint Genome Institute and the Molecular Foundry … challenges in the sourcing, recovery, and utilization of critical minerals and materials. For accepted proposals, … provides customized analysis, the JGI also participates in publication of results. Go here for additionial information, …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… data mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced … moved from the mitochondria into the nuclear genome over evolutionary time. They also discovered more than 6,000 …
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FICUS Overview
… for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … where I was a graduate student. Aflatoxin, of course, is a fungal natural product which is a liver toxin when humans … They’re at the base of the animal kingdom, in terms of evolution. Because they’re sitting there, they tend to have …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and … the pharmaceutical industry. He holds joint appointments as Fungal and Algal Program Head at the JGI, a Senior Scientist … at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of …
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Frequently Asked Questions: Project Management
… You can visit the Products & Offerings section of our website for more details, including a downloadable pdf of products categorized by Science Program.  … The majority of JGI projects come from the user community. Find out about … proposal calls and proposal submission, as well as examples of approved proposals, please visit the Proposals FAQ .  …
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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … and viral diversity, leading to a better understanding of microbial communities and ecosystem function.  The … metagenomes, we gain insights into microbial interactions, evolution, and adaptation, ultimately informing strategies …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … where this happened have a tendency to be susceptible to a fungal infection of rye grain – a specific fungus, Claviceps … near this tree and so there was probably some historical evolutionary event where the DNA transferred from the fungus …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … friends or foes. The Impact Microbial communities comprised of fungi and bacteria can thrive in plant roots. They play …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … of these varied biomes; the forests share only about 20% of their fungal species. To make useful comparisons, the …
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … Weight DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and quality …
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