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Identifying the Microbial Cleanup Crew at a Superfund Site
Analysis reveals the microbial community involved in a bioremediation … PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … a (microbial) community to clean up a Superfund site. The Impact The Comprehensive Environmental Response, …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … The  Open Green Genomes (OGG) project seeks to develop comparative high quality genomes and annotations across the … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … a BGC fragment can be useful in some way if you’re doing comparative analysis. We want to make sure we had everything …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help …
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Partners
… complementary expertise to advance the science and serve as impact multipliers . The JGI has a long-term partnership with the HudsonAlpha Institute for … our Plant Program, and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA …
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User Support
The JGI Project Management Office carries out a number of activities to facilitate … define the scope of work and outline roles and responsibilities resulting in a formal Statement of Work (SOW). … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … the system. [ Go here to learn more about Cameron Currie’s metagenomics research, enabled in part by JGI’s Community … in their natural environments, and or things that human impact is going to play a role in, like antibiotic usage …
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Science Programs
The JGI’s Science Programs offer support to users and their research efforts.  JGI … scientists lend their expertise to enhance the scientific impact of user projects, develop cutting edge approaches for and with users, and create computational tools and resources for them. Their concerted efforts …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2024 DOE Metrics There …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic … Lab), and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in … modeling], but they might be interested in how biochemistry impacts what they work on. The genomics community can now …
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Nikos Kyrpides
… lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters …
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Frequently Asked Questions: Project Management
Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA Synthesis projects: Miranda Harmon-Smith … Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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