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Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … environments, varied with a lot of metadata. I think that’s important. Really, also, having the same protocols– I think, …
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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … Successful applications will focus on high-risk/high-payoff proposals within the focused topic areas that can be … provides customized analysis, the JGI also participates in publication of results. …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … barcode-based genetics (RB-TnSeq), and computational genomics to better understand the plant-associated …
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FICUS Overview
… to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National User Facilities into … provides customized analysis, the JGI also participates in publication of results. … as needed), and the work plan is written into a Statement of Work document. …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
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Natural Prodcast Episode 24: Jackie Winter and SMC
… as many as it did and how that became sort of a trend in genomics. So anyway, yeah, JGI has been working in secondary … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … a BGC fragment can be useful in some way if you’re doing comparative analysis. We want to make sure we had everything …
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Natural Prodcast
… about natural products and the science and scientists of secondary metabolism. Natural products, secondary … unique and different from one another. They are incredibly important to medicine, the environment, and human health. As … research, “Natural Prodcast” serves as an important line of communication to the scientific community. Host Dan …
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Community Science Program
… synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic … biological function. The  New Investigator and Functional Genomics calls do not require an LOI.  Projects will be …
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Mapping Heat Resistance in Yeasts
… annotation in fungal genomes. The Science In a proof-of-concept study, researchers demonstrated that a new … environment. Summary There are more than 1,000 species of yeasts and they vary in terms of genetics, metabolism and … biofuel production. Efforts such as the 1000 Fungal Genomics Project led by the DOE Joint Genome Institute …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular level. Integrating genomics with metabolomics fuels the discovery  of novel …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring … .  Many users rely on a multifaceted combination of genomic, transcriptomic, proteomic, phenotypic, … analysis. To meet these needs, the JGI deploys state-of-the-art sequencers and platforms dedicated to synthesis, …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific … community as a user facility pioneering functional genomics to solve the most relevant bioenergy and environmental problems.  The mission of the National Energy Research Scientific Computing Center …
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