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Reference genome sequence of the model plant Setaria
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Metabolomics Program
… works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular level. Integrating genomics with … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …
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FICUS-NERSC/KBASE
… discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …
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A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci
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Agrobacterium‐Mediated Transformation of Brachypodium distachyon
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Natural Prodcast Episode 14: Nigel Mouncey
… my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for a couple … as the fermentation process itself. And we built a nice modeling feedback loop for the fermentation work, which … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Natural Prodcast Episode 4: Nancy Keller
… looking at that I’m a very visual person. So, when we make genetic mutants in a fungal isolate, I can see something … challenges were associated with getting good transformation systems going. That has a lot to do with, well, the fact … more interested just to see if we can use Aspergillus as a model for expressing hard to work with eukaryote [genes]. So …
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Jeremy Schmutz
Nature Biotechnology 30: 555-561. The International Brachypodium Initiative. Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 2010;463:763-8. Schmutz, J et al. 2010. … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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FICUS Overview
The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 … individual user facilities. A Letter of Intent is required. For accepted proposals, sequencing, synthesis, metabolomics … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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KARRIKIN INSENSITIVE2 regulates leaf development, root system architecture and arbuscular‐mycorrhizal symbiosis in Brachypodium distachyon
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Cataloging the Microbes that Manage the Health of River Systems
States. They also provided multiple access points to the information. The team harnessed a community-science program to … to the community level. The Impact Rivers are transport systems, and their health is heavily reliant on the energy … do—can help researchers develop predictive watershed scale models to manage river ecosystems. One application for the …
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Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
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