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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched … proposal call . This represents a unique opportunity for researchers to request the capabilities and expertise of … Access to the Molecular Foundry and use of JGI capabilities … capabilities, they then ship samples—such as DNA and RNA for sequencing—to JGI. Users are responsible for covering …
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Natural Prodcast Episode 18: A CSP Primer
… DAN UDWARY: It’s been a while, but Natural Prodcast is back again for another round of episodes. If you stick around for the … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we … Episode Transcript …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically … led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is also affiliated with … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of …
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Natural Prodcast Episode 16: Marcy Balunas
… DAN: Hey Marcy!  ALISON: Hey Marcy?  MARCY: Hello. How’s it … and the bacteria and how the chemistry is going back and forth between them is part of what fascinates me about what … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … Scientific Program Product Description Deliverables Cycle Time FY25 Q1  …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences … array of combinations, are unremarkable, save perhaps for the absence of all the other letters of the alphabet. … one of the tools that researchers can apply to study the transcription factors that control how genes are turned on …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science … regulation is critical to ensuring genes vital for growth and survival across various environments are … This work was supported by the U.S. Department of Energy Office of …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and … advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked … gene regulation mapping Previous methods to identify where transcription factors (TFs) — the proteins that flip genetic …
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Grasses use an alternatively wired bHLH transcription factor network to establish stomatal identity
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic … approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … Our research focuses on the assembly of metagenomic sequence data … interactions, evolution, and adaptation, ultimately informing strategies for environmental monitoring, …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of … I wanted to tell you about in this introduction. First and foremost, our interview this week is with Professor Brian … Protocol media number 2, ISP2, and dilute it by a factor of 100. And we got– we would find– we found organisms …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, … biology and microfluidics at the University of California, San Diego. As the Sequencing Technology … a method that enables high-throughput characterization of transcription factor binding sites and which has been …
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